Costume Debugger for Reverse Engineering

I am looking for a tool which helps me to faster understand unknown binaries. When using tools like OllyDBG, IDA and Cheatengine its only possible to check a few addresses if they get accessed and only if you have an idea where to search. If you have no clue where a function is its hard to impossible to find them using this 3 Tools. My idea was to speed up this task by Building a Tool which is able to track which addresses are accessed, in combination with the possibility to say track all addresses which are currently a special symbol like (E9 ( JMP)) or just all between address x and address y. When one address gets accessed we would need two information. When? Something like a time stamp and How often got this address accessed? Counter. Now we need one more a filter to delete all tracking on addresses which don't fit special conditions like: 0<Counter<1 ( Delete all tracking and data from addresses which got accessed less then 1 time and more then 1 time. Or Counter==1. Accessed addresses should be displayed in a sort of timeline to easely understand the flow of the program. Other way to use it would be if we have a function from address 100 to 150 lets say. We could just lay down a tracker on every address between and every time it gets executed we get a timeline where the program went inside the function and there for which jumps it took. An other thing which is important for me is that we write as less to the process as needed because it can be that the process we are looking on is using techniques to detected changes in the memory. So i am thankful for every idea how to implement it in a way which minimizes detection of it. I am open and thankful for your ideas if you have some knowledge in the field or reversing how to improve the program or what can we done better/more effective to achieve the goal.